Preheat the oven to 325°F (160°C).
Combine graham cracker crumbs and melted butter in a bowl.
Press the graham cracker mixture firmly into the bottom of a muffin tin.
In a mixing bowl, beat the softened cream cheese until smooth.
Add granulated sugar and vanilla extract to the cream cheese, mixing until well combined.
Add eggs, one at a time, blending well after each addition.
Divide the cheesecake filling evenly over the crusts in the muffin tin.
Bake in the preheated oven for 20-25 minutes, until set around the edges.
Let the cheesecakes cool at room temperature before refrigerating for at least 2 hours.
While the cheesecakes cool, prepare the apple topping by sautéing diced apples with lemon juice, brown sugar, cinnamon, and a pinch of salt.
Once the cheesecakes are fully chilled, spoon the apple topping generously over each one before serving.